diff options
Diffstat (limited to 'tools/octopus-call.nix')
-rw-r--r-- | tools/octopus-call.nix | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tools/octopus-call.nix b/tools/octopus-call.nix index 80092e0..81619b6 100644 --- a/tools/octopus-call.nix +++ b/tools/octopus-call.nix @@ -18,7 +18,7 @@ with types; inputs: let - getref = f: matchFiletype "octopus-call" { bam = { ref, ... }: ref; cram = { ref, ... }: ref; } f; + getref = matchFiletype "octopus-call" { bam = { ref, ... }: ref; cram = { ref, ... }: ref; }; refs = map getref inputs; ref = head refs; @@ -63,6 +63,6 @@ stage { ${optionalString (targets != null) (handleTarget targets)} \ ${flags} ''; - passthru.filetype = filetype.vcf { ref = ref; }; + passthru.filetype = filetype.vcf { inherit ref; }; passthru.multicore = true; } |