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Diffstat (limited to 'tools/octopus-callSomatic.nix')
| -rw-r--r-- | tools/octopus-callSomatic.nix | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/tools/octopus-callSomatic.nix b/tools/octopus-callSomatic.nix index f2e264c..b6106a7 100644 --- a/tools/octopus-callSomatic.nix +++ b/tools/octopus-callSomatic.nix @@ -77,7 +77,11 @@ stage { ${optionalString (targets != null) (handleTarget targets)} \ -N $normal \ ${flags} + + # Strip out octopus ARGV + sed -i '/^##octopus=/d' $out ''; passthru.filetype = filetype.vcf { inherit ref; }; passthru.multicore = true; + stripStorePaths = false; } |