diff options
Diffstat (limited to 'tools/octopus.nix')
| -rw-r--r-- | tools/octopus.nix | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/tools/octopus.nix b/tools/octopus.nix index 4d0c7f6..858d133 100644 --- a/tools/octopus.nix +++ b/tools/octopus.nix @@ -3,6 +3,13 @@ with bionix; { + /* Call variants for a population + Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> [bam] -> vcf + */ call = callBionixE ./octopus-call.nix; + + /* Call somatic variants + Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> { normal :: bam, tumours :: [bam] } -> vcf + */ callSomatic = callBionixE ./octopus-callSomatic.nix; } |