1 files changed, 17 insertions, 0 deletions
diff --git a/tools/quip-quip.nix b/tools/quip-quip.nix
new file mode 100644
index 0000000..77cf557
--- /dev/null
+++ b/tools/quip-quip.nix
@@ -0,0 +1,17 @@
+{bionix}:
+with bionix;
+with lib.types;
+  input: let
+    ref = matchFiletype "quip" {bam = f: f.ref;} input;
+  in
+    stage {
+      name = "quip";
+      buildInputs = [quip.app];
+      buildCommand = ''
+        ln -s ${input} input.bam
+        quip -r ${ref} input.bam
+        cp input.bam.qp $out
+      '';
+      stripStorePaths = false;
+      passthru.filetype = filetype.qp input.filetype;
+    }