diff options
Diffstat (limited to 'tools/sambamba.nix')
| -rw-r--r-- | tools/sambamba.nix | 25 |
1 files changed, 13 insertions, 12 deletions
diff --git a/tools/sambamba.nix b/tools/sambamba.nix index 3c1d1fd..77289fe 100644 --- a/tools/sambamba.nix +++ b/tools/sambamba.nix @@ -5,34 +5,35 @@ with bionix; let gen = callBionixE ./sambamba-generic.nix; -in { +in +{ /* Sort aligned reads - Type: { nameSort :: bool, ... } -> bam -> bam + Type: { nameSort :: bool, ... } -> bam -> bam */ sort = callBionixE ./sambamba-sort.nix; /* Build an index - Type: { ... } -> bam -> index + Type: { ... } -> bam -> index */ - index = def gen {tool = "index"; }; + index = def gen { tool = "index"; }; /* Merge bam files - Type: { ... } -> [bam] -> bam + Type: { ... } -> [bam] -> bam */ - merge = def gen {tool = "merge"; }; + merge = def gen { tool = "merge"; }; /* Slice a region out of a bam file - Type: { region, ... } -> bam -> bam + Type: { region, ... } -> bam -> bam */ - slice = def gen {tool = "slice"; }; + slice = def gen { tool = "slice"; }; /* Compute flag statistics - Type: { ... } -> bam -> flagstat + Type: { ... } -> bam -> flagstat */ - flagstat = def gen {tool = "flagstat"; }; + flagstat = def gen { tool = "flagstat"; }; /* Mark duplicates - Type: { ... } -> bam -> bam + Type: { ... } -> bam -> bam */ - markdup = def gen {tool = "markdup"; }; + markdup = def gen { tool = "markdup"; }; } |