diff options
Diffstat (limited to 'tools/snpeff.nix')
| -rw-r--r-- | tools/snpeff.nix | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/tools/snpeff.nix b/tools/snpeff.nix index c5ef04d..fb3f4a9 100644 --- a/tools/snpeff.nix +++ b/tools/snpeff.nix @@ -3,6 +3,13 @@ with bionix; { + /* Annotate variants with SNPEff database. Some annotation DBs available in bionix.ref (e.g., bionix.ref.grch38.snpeff.db). + Type: { db, ... } -> vcf -> vcf + */ annotate = callBionixE ./snpeff-annotate.nix; + + /* Annotate variants with dbNSFP database. Some dbNSFP annotation DBs available in bionix.ref (e.g., bionix.ref.grch38.snpeff.dbNSFP). + Type: { dbnsfp, ... } -> vcf -> vcf + */ dbnsfp = callBionixE ./snpeff-dbnsfp.nix; } |