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-rw-r--r--tools/ascat.nix8
1 files changed, 8 insertions, 0 deletions
diff --git a/tools/ascat.nix b/tools/ascat.nix
index 05e2299..9e80e4a 100644
--- a/tools/ascat.nix
+++ b/tools/ascat.nix
@@ -4,6 +4,14 @@ with bionix;
{
app = pkgs.callPackage ./ascat-app.nix {};
+
+ /* Generate GC correction file for ascatNGS.
+ Type: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC)
+ */
gccorrect = callBionixE ./ascat-gccorrect.nix;
+
+ /* Call CNVs using ascatNGS. Gender is a string as per ascatNGS docs (e.g., "XX").
+ Type: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs
+ */
callCNV = callBionixE ./ascat-callCNV.nix;
}