index
:
bionix.git
assets
biocommons-talk
master
wehi-talk
Functional, highly-reproducible bioinformatics pipelines
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
Age
Commit message (
Collapse
)
Author
2018-10-22
name qsub with name of derivation: fixes #7
Justin Bedo
2018-10-17
rename sigterm patch
Justin Bedo
2018-10-09
Simplify default to error in types
Justin Bedo
2018-10-08
Add identity to compression functions
Justin Bedo
2018-10-08
Fix type in samtools-view
Justin Bedo
2018-10-05
implement types
Justin Bedo
2018-10-04
Add defQsub function
Justin Bedo
2018-10-04
Refactor references
Justin Bedo
2018-10-04
Add def function to simplify overrides
Justin Bedo
2018-10-04
Add qsub function to override all attributes
Justin Bedo
2018-10-04
Refactor to use bionix tree directly
Justin Bedo
2018-10-04
add patch for nix to send SIGTERM instead of SIGKILL
Justin Bedo
2018-10-04
Fix typo in reference name
Justin Bedo
2018-10-04
Stuff to match & points of difference
l-d-s
2018-10-03
Use http rather than ftp for mm10
l-d-s
2018-10-03
fix indenting and syntax error
Justin Bedo
2018-10-03
refactor reference location to lib
Justin Bedo
2018-10-03
Add GRCm38-p6
Justin Bedo
2018-10-03
sha256 hash for mm10
l-d-s
2018-10-02
Add mm10 reference (UCSC)
l-d-s
2018-09-28
Add crumble
Justin Bedo
2018-09-28
Change mosdepth plotting to multisample
Justin Bedo
2018-09-28
Improve cleanup of qsub
Justin Bedo
2018-09-28
Fix missing index for mosdepth
Justin Bedo
2018-09-27
Allow flag passing to bwa index
Justin Bedo
2018-09-27
Allow changing tmpdir for qsub
Justin Bedo
2018-09-26
Missing GRIDSS files
Justin Bedo
2018-09-26
Add GRIDSS
Justin Bedo
2018-09-26
move bwa index to parameters
Justin Bedo
2018-09-26
Fix mosdepth
Justin Bedo
2018-09-26
Fix fastqc
Justin Bedo
2018-09-26
fix qsub expression
Justin Bedo
2018-09-26
Add qsub to bionix top level
Justin Bedo
2018-09-26
Add flagstat and fastqc
Justin Bedo
2018-09-26
refactor, add mosdepth, and fixes for bwa
Justin Bedo
2018-09-24
use a map in the test pipeline
Justin Bedo
2018-09-24
Working test-tnpair
l-d-s
2018-09-24
Ignore result
l-d-s
2018-09-20
Missing reference for example
Justin Bedo
2018-09-20
Add example TNPair
Justin Bedo
2018-09-20
Wrap some tools and make an example pipeline
Justin Bedo
2018-09-07
Fix clobbered title change
Justin Bedo
2018-09-07
Editing
Justin Bedo
2018-09-07
Changes from Tony
Justin Bedo
2018-09-06
Take 2, sent to TP
l-d-s
2018-09-06
Editing
Justin Bedo
2018-09-06
Small deletion
l-d-s
2018-09-06
Attempt at TP suggestions
l-d-s
2018-09-06
delete "guarantees"
l-d-s
2018-09-06
demonstrate -> show
l-d-s
[next]