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| author | Justin Bedo <cu@cua0.org> | 2018-09-26 16:41:05 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-09-26 16:41:05 +1000 |
| commit | 21d71e6892f529f89d419bd9b2fa1a127a1dc003 (patch) | |
| tree | b0fea06dda3cbc4186308c9c5774766796df275f | |
| parent | 9de0e998ef5fe8f53412a77f99862bc9f5c15f24 (diff) | |
Add GRIDSS
| -rw-r--r-- | default.nix | 1 | ||||
| -rw-r--r-- | references.nix | 10 |
2 files changed, 10 insertions, 1 deletions
diff --git a/default.nix b/default.nix index 6050857..25bbf34 100644 --- a/default.nix +++ b/default.nix @@ -6,6 +6,7 @@ let in with self; { bwa = callBionix ./tools/bwa.nix; fastqc = callBionix ./tools/fastqc.nix; + gridss = callBionix ./tools/gridss.nix; mosdepth = callBionix ./tools/mosdepth.nix; platypus = callBionix ./tools/platypus.nix; ref = callBionix ./references.nix; diff --git a/references.nix b/references.nix index e7f1c7a..282b62c 100644 --- a/references.nix +++ b/references.nix @@ -5,7 +5,7 @@ with nixpkgs; rec { grch38 = grch38-p12; grch38-p12 = { - seq = stdenv.mkDerivation rec { + seq = stdenvNoCC.mkDerivation rec { name = "seq-grch38.${version}"; version = "p12"; src = fetchurl { @@ -14,5 +14,13 @@ rec { }; buildCommand = "gunzip < $src > $out"; }; + blacklist = stdenvNoCC.mkDerivation { + name = "blacklist-grch38"; + src = fetchurl { + url = "http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz"; + sha256 = "1lpnqq1mjidbdxj5i6x26rxa8x1rs8q3hlf0z1z49j3jsnkgffky"; + }; + buildCommand = "gunzip < $src > $out"; + }; }; } |