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Functional, highly-reproducible bioinformatics pipelines
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Author
2020-12-21
snpeff: dbnsfp update
Justin Bedo
2020-11-18
add encode blacklist to references
Justin Bedo
2020-02-14
add gdrive downloader
Justin Bedo
2019-11-29
snpeff: GRCh37.87 -> GRCh37.75
Justin Bedo
2019-09-25
grch37: add dbsnp
Justin Bedo
2019-09-25
grch38.31 → grch38.32
Justin Bedo
2019-09-25
add grch37
Justin Bedo
2019-07-08
ensembl: init gtf and gff3
Justin Bedo
2019-07-08
ensembl: abstract version
Justin Bedo
2019-06-12
grcm38: fix typo in name of ensembl transcripts
Justin Bedo
2019-06-11
references: fix file mode (remove executable flag)
Justin Bedo
2019-02-15
ref: missing pkg scope on gawk
Justin Bedo
2019-02-06
ref-grch38-snpeff-db: fix pkg scope
Justin Bedo
2019-01-23
stage: change to stdenvNoCC
Justin Bedo
2019-01-11
ucscgenes: fix url to correct hg38
Justin Bedo
2019-01-10
ref: add UCSC gene annotations
Justin Bedo
2019-01-09
large refactor
Justin Bedo
2019-01-08
snpeff: init
Justin Bedo
2018-11-14
Add ensembl mouse transcriptome
Justin Bedo
2018-11-02
kallisto: init
Justin Bedo
2018-10-26
init: cosmic & dbsnp for grch38
Justin Bedo
2018-10-05
implement types
Justin Bedo
2018-10-04
Fix typo in reference name
Justin Bedo
2018-10-03
Use http rather than ftp for mm10
l-d-s
2018-10-03
fix indenting and syntax error
Justin Bedo
2018-10-03
refactor reference location to lib
Justin Bedo