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Functional, highly-reproducible bioinformatics pipelines
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2018-11-26
qsub: output non-retryable errors
Justin Bedo
2018-11-26
qsub: let sleep timing be configurable
Justin Bedo
2018-11-26
qsub: retry qsub if requested
Justin Bedo
2018-11-23
qsub: update to check job_state field
Justin Bedo
2018-11-23
qsub: be more specific with qstat polling
Justin Bedo
2018-11-14
Add ensembl mouse transcriptome
Justin Bedo
2018-11-02
kallisto: init
Justin Bedo
2018-10-26
init: cosmic & dbsnp for grch38
Justin Bedo
2018-10-25
Improve type safety of samtools-merge
Justin Bedo
2018-10-25
Simplify types for sorting
Justin Bedo
2018-10-22
name qsub with name of derivation: fixes #7
Justin Bedo
2018-10-09
Simplify default to error in types
Justin Bedo
2018-10-05
implement types
Justin Bedo
2018-10-04
Fix typo in reference name
Justin Bedo
2018-10-03
Use http rather than ftp for mm10
l-d-s
2018-10-03
fix indenting and syntax error
Justin Bedo
2018-10-03
refactor reference location to lib
Justin Bedo
2018-09-28
Improve cleanup of qsub
Justin Bedo
2018-09-27
Allow changing tmpdir for qsub
Justin Bedo
2018-09-26
fix qsub expression
Justin Bedo
2018-09-26
Add qsub to bionix top level
Justin Bedo
2018-09-20
Wrap some tools and make an example pipeline
Justin Bedo