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Functional, highly-reproducible bioinformatics pipelines
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gridss.nix
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Author
2021-10-14
gridss: 2.12.0 -> 2.12.2
Justin Bedo
2021-10-14
Revert "gridss: 2.12.0 -> 2.12.1"
Justin Bedo
2021-09-21
gridss: specify cores for all multithreaded phases
Justin Bedo
2021-09-16
gridss: 2.12.0 -> 2.12.1
Justin Bedo
2021-08-02
gridss: drop softclip to split read conversion
Justin Bedo
2021-05-25
gridss: 2.11.1 -> 2.12.0
Justin Bedo
2021-04-20
gridss: 2.10.2 -> 2.11.1
Justin Bedo
2021-02-03
add inline documentation
Justin Bedo
2020-12-14
gridss: 2.10.1 -> 2.10.2
Justin Bedo
2020-11-02
gridss: 2.10.0 -> 2.10.1
Justin Bedo
2020-10-15
gridss: 2.9.4 -> 2.10.0
Justin Bedo
2020-09-02
gridss: shard assembly into 10 pieces by default
Justin Bedo
2020-07-16
gridss: 2.9.1 -> 2.9.4
Justin Bedo
2020-05-24
gridss: 2.8.3 -> 2.9.1
Justin Bedo
2020-04-10
gridss 2.7.3 -> 2.8.3
Justin Bedo
2019-11-27
gridss: 2.7.2 → 2.7.3
Justin Bedo
2019-11-20
gridss: 2.7.1 → 2.7.2
Justin Bedo
2019-11-04
gridss: 2.7.0 → 2.7.1
Justin Bedo
2019-11-01
gridss: 2.6.2 -> 2.7.0
Justin Bedo
2019-09-25
gridss 2.6.0 → 2.6.2
Justin Bedo
2019-09-10
gridss: 2.5.2 -> 2.6.0
Justin Bedo
2019-08-29
gridss: 2.5.1 -> 2.5.2
Justin Bedo
2019-08-15
gridss: 2.5.0 -> 2.5.1
Justin Bedo
2019-07-28
gridss: 2.4.0 -> 2.5.0
Justin Bedo
2019-06-21
gridss: 2.2.2 -> 2.4.0
Justin Bedo
2019-04-08
grids: add function to include assemblies with annotated VCF
Justin Bedo
2019-03-28
gridss: 2.0.0 → 2.2.2
Justin Bedo
2019-03-06
api docs: init GRIDSS
Justin Bedo
2019-01-09
large refactor
Justin Bedo
2018-12-19
gridss: simplify preprocessing and rewrite using new pipe function
Justin Bedo
2018-12-18
qsub: refactor overriding
Justin Bedo
2018-12-12
gridss: refactor identify & annotate variants
Justin Bedo
2018-11-22
gridss: restructure gridss pipeline
Justin Bedo
2018-11-13
Merge branch 'master' of https://github.com/PapenfussLab/bionix
l-d-s
2018-11-12
Attempt to integrate config file into GRIDSS stage
l-d-s
2018-11-07
Fix to gridss.
l-d-s
2018-10-29
Split gridss into constituents
Justin Bedo
2018-10-05
implement types
Justin Bedo
2018-10-04
Refactor to use bionix tree directly
Justin Bedo
2018-09-26
Missing GRIDSS files
Justin Bedo