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AgeCommit message (Expand)Author
2021-07-28bugfix: use unsorted type for alignment outputJustin Bedo
2021-05-25gridss: 2.11.1 -> 2.12.0Justin Bedo
2021-04-20gridss: 2.10.2 -> 2.11.1Justin Bedo
2021-03-08facets: use tagged version of pctGCdataJustin Bedo
2021-02-23samtools-view: support specifying outfmt via stringsJustin Bedo
2021-02-19samtools-index: support cram indexingJustin Bedo
2021-02-03add inline documentationJustin Bedo
2021-02-03bwa-mem2: 2.0 -> 2.1Justin Bedo
2021-01-25kallisto-quant: strip call form run infoJustin Bedo
2021-01-20facets: 0.5.14 -> 0.6.1Justin Bedo
2020-12-14gridss: 2.10.1 -> 2.10.2Justin Bedo
2020-11-30gridss.assemble: fix workdir manipulationJustin Bedo
2020-11-16sambamba: initJustin Bedo
2020-11-02star: initJustin Bedo
2020-11-02gridss: 2.10.0 -> 2.10.1Justin Bedo
2020-10-15gridss: 2.9.4 -> 2.10.0Justin Bedo
2020-10-13mutect: fix app expression and tag output as vcfJustin Bedo
2020-09-02gridss: shard assembly into 10 pieces by defaultJustin Bedo
2020-09-02gridss: add missing flags parameterJustin Bedo
2020-08-25whisper: app expression merged into nixpkgsJustin Bedo
2020-08-10hisat2: add index prefixJustin Bedo
2020-08-10bwa: alt regex generalisationJustin Bedo
2020-08-10bwa2: update to releaseJustin Bedo
2020-07-16gridss: 2.9.1 -> 2.9.4Justin Bedo
2020-07-08cnvkit: python 2 -> python 3Justin Bedo
2020-06-27whisper: missing app expressionJustin Bedo
2020-06-27whisper: init 2.0Justin Bedo
2020-06-27octopus: write evidence bams to multioutputJustin Bedo
2020-06-05facets: 0.5.6 -> 0.5.14Justin Bedo
2020-06-02samtools-merge: noop if only a single fileJustin Bedo
2020-05-24gridss: 2.8.3 -> 2.9.1Justin Bedo
2020-05-24octopus: remove normal flagJustin Bedo
2020-04-27octopus: parameterise max-genotypes and targetsJustin Bedo
2020-04-10gridss 2.7.3 -> 2.8.3Justin Bedo
2020-02-09lastal: initJustin Bedo
2020-02-03octopus-call: fix filetype typoJustin Bedo
2019-12-20kallisto: attempt at making determinsticJustin Bedo
2019-12-20lumpy: fix error messageJustin Bedo
2019-12-18lumpy: initJustin Bedo
2019-12-17delly: missing fileJustin Bedo
2019-12-17manta: make multithreaded and apply execution contextJustin Bedo
2019-12-17delly: initJustin Bedo
2019-12-16manta: initJustin Bedo
2019-12-12octopus: fix incorrect error messageJustin Bedo
2019-12-05platypus: remove debugging codeJustin Bedo
2019-11-27gridss: 2.7.2 → 2.7.3Justin Bedo
2019-11-20gridss: 2.7.1 → 2.7.2Justin Bedo
2019-11-04gridss: 2.7.0 → 2.7.1Justin Bedo
2019-11-01gridss: 2.6.2 -> 2.7.0Justin Bedo
2019-09-25facets: assume sorted vcfJustin Bedo
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