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authorJustin Bedo <cu@cua0.org>2021-07-29 18:26:11 +1000
committerJustin Bedo <cu@cua0.org>2021-07-29 18:26:11 +1000
commit95a461636cc65274ec80aea2d7b0316dfe13496f (patch)
treeaddb747b30498bc0f53a90b81474dad2fd2a4a39
parent0474c7e202911528857cd3ee18a37a8091918000 (diff)
add nix run instructions to readme
-rw-r--r--README6
1 files changed, 4 insertions, 2 deletions
diff --git a/README b/README
index 87b50ee..063dcc5 100644
--- a/README
+++ b/README
@@ -2,7 +2,7 @@ This is a reimplementation of Xenomapper [1] in Haskell. Unlike the
orginal it is significantly more focused in scope: only primary specific
alignments are output.
-Example usage: "xenomapper-hs primary-specific.bam primary.bam secondary.bam"
+Example usage: "xenomapper primary-specific.bam primary.bam secondary.bam"
The first argument is the output bam path, and the subsequent are the
primary and secondary alignments. NB: the inputs must be name sorted
@@ -16,7 +16,9 @@ to build, or if you have already cloned the repository then simply
nix build
-in the root.
+in the root. You can also just:
+
+ nix run git://vk3.wtf/xenomapper-hs.git primary-specific.bam primary.bam secondary.bam
--
1: https://github.com/genomematt/xenomapper