linalg.gitA very simple linear algebra library for plan 9.2 years
clinvar.gitClinvar FZF based TUI2 years
genodict.gitCompiles genomes to a dictionary representation and computes similarity between ...2 years
xenomapper-hs.gitFilter primary alignments by a secondary alignment (for e.g., xenografts)2 years
flickrfs.gitFlicker 9P file server - deprecated: here for historical interest2 years
forth.gitForth implementation in assembly2 years
bionix.gitFunctional, highly-reproducible bioinformatics pipelines13 months
LinProg.gitHaskell library with EDSL for linear programming2 years
9son.gitJSON parser for Plan 92 years
latexfmt.gitLaTeX formatter21 months
ppl.gitLazy probabilistic programming language reimplementation9 months
bionix-wehi-workshop.gitMaterial for WEHI BioNix workshop14 months
codapca.gitPCA for compositional data9 months
pmt.gitPoisson Margin Test implementation in R2 years
mavedb-scraper.gitScrapes MaveDB and merges assays into a SQLite database12 months
phylogenies.gitSubclonal phylogeny inference10 months
wehi-bioinformatics-talk-2022.gitTalk I gave in the Bioinformatics division seminar series at WEHI.12 months
dedumi.gitUMI deduplication for paired end sequencing4 weeks