aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--default.nix1
-rw-r--r--references.nix10
2 files changed, 10 insertions, 1 deletions
diff --git a/default.nix b/default.nix
index 6050857..25bbf34 100644
--- a/default.nix
+++ b/default.nix
@@ -6,6 +6,7 @@ let
in with self; {
bwa = callBionix ./tools/bwa.nix;
fastqc = callBionix ./tools/fastqc.nix;
+ gridss = callBionix ./tools/gridss.nix;
mosdepth = callBionix ./tools/mosdepth.nix;
platypus = callBionix ./tools/platypus.nix;
ref = callBionix ./references.nix;
diff --git a/references.nix b/references.nix
index e7f1c7a..282b62c 100644
--- a/references.nix
+++ b/references.nix
@@ -5,7 +5,7 @@ with nixpkgs;
rec {
grch38 = grch38-p12;
grch38-p12 = {
- seq = stdenv.mkDerivation rec {
+ seq = stdenvNoCC.mkDerivation rec {
name = "seq-grch38.${version}";
version = "p12";
src = fetchurl {
@@ -14,5 +14,13 @@ rec {
};
buildCommand = "gunzip < $src > $out";
};
+ blacklist = stdenvNoCC.mkDerivation {
+ name = "blacklist-grch38";
+ src = fetchurl {
+ url = "http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz";
+ sha256 = "1lpnqq1mjidbdxj5i6x26rxa8x1rs8q3hlf0z1z49j3jsnkgffky";
+ };
+ buildCommand = "gunzip < $src > $out";
+ };
};
}