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authorJustin Bedo <cu@cua0.org>2019-12-17 12:30:59 +1100
committerJustin Bedo <cu@cua0.org>2019-12-17 12:32:45 +1100
commite136c6f6027bcc125f3ab7885e37d79380a81e54 (patch)
tree6bbb61cb3f8c014cbde69ff786ce166716ced868
parent4a7f5bfd34f53906901059c501aff9b5459eccf8 (diff)
Fix shard test
-rw-r--r--test-tnpair.nix5
1 files changed, 1 insertions, 4 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 8d9dc88..ae88549 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -41,10 +41,7 @@ let
glvariants = strelka.call {} (builtins.attrValues alignments);
platypusVars = platypus.call {} (builtins.attrValues alignments);
octopusVars = octopus.call {} (builtins.attrValues alignments);
- shards = pipe [
- (shard.fastQPair 2)
- (map (bwa.align {inherit ref;}))
- ] normal.files;
+ shards = map (bwa.align {inherit ref;}) (shard.fastQPair 2 normal.files);
};
tnpairResult = processPair tnpair;