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| author | Justin Bedo <cu@cua0.org> | 2019-12-17 12:32:25 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-12-17 12:32:45 +1100 |
| commit | eb2769421dc7fce6de81c6bf79946b2f050c215b (patch) | |
| tree | 486a58232ff57e87a2a12eb909109f4be24e6cd5 | |
| parent | e136c6f6027bcc125f3ab7885e37d79380a81e54 (diff) | |
manta: make multithreaded and apply execution context
| -rw-r--r-- | tools/manta-call.nix | 3 | ||||
| -rw-r--r-- | tools/manta.nix | 2 |
2 files changed, 3 insertions, 2 deletions
diff --git a/tools/manta-call.nix b/tools/manta-call.nix index e230a40..099d5e6 100644 --- a/tools/manta-call.nix +++ b/tools/manta-call.nix @@ -34,7 +34,8 @@ stage { --runDir=$TMPDIR \ --referenceFasta=ref.fa \ ${flags} - ./runWorkflow.py + ./runWorkflow.py -j $NIX_BUILD_CORES cp -r results $out ''; + passthru.multicore = true; } diff --git a/tools/manta.nix b/tools/manta.nix index aa8b762..8136fa7 100644 --- a/tools/manta.nix +++ b/tools/manta.nix @@ -3,5 +3,5 @@ with bionix; { - call = callBionix ./manta-call.nix; + call = callBionixE ./manta-call.nix; } |