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| author | Justin Bedo <cu@cua0.org> | 2019-12-17 12:30:38 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-12-17 12:32:45 +1100 |
| commit | 4a7f5bfd34f53906901059c501aff9b5459eccf8 (patch) | |
| tree | 19a6f0b0596be2971d95ef73de15390e21dcafc0 /test-tnpair.nix | |
| parent | c48e7b40c82326006136463282b803eebc648df0 (diff) | |
delly: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 49c9bb9..8d9dc88 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -74,6 +74,7 @@ let strelka-indels = tnpairResult.variants.indels; "strelka.snvs.vcf" = tnpairResult.variants.snvs; "strelka.gl.vcf" = tnpairResult.glvariants; + delly = delly.call {} (with tnpairResult.alignments; [normal tumour]); manta = manta.call {} (with tnpairResult.alignments; {normals = [normal tumour]; }); mantaTN = manta.call {} (with tnpairResult.alignments; {normals = [normal]; tumour = tumour;}); mantaT = manta.call {} (with tnpairResult.alignments; {tumour = tumour;}); |