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| author | Justin Bedo <cu@cua0.org> | 2019-07-08 10:23:54 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-07-08 15:07:32 +1000 |
| commit | 5cdc23b7e62d1d0be67047ff95cd74e570a65922 (patch) | |
| tree | 3c74d0cf09efdf2aae4eabe82c3c8a0e0966146d /test-tnpair.nix | |
| parent | f9b34ffb0d985295223ed952ae5262c39aeda101 (diff) | |
tests: add kallisto test
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index afbdf68..5d9fee2 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -64,6 +64,7 @@ let }; testNaming = linkOutputs { + kallisto = kallisto.quant {inherit ref;} (attrValues tnpair.tumour.files); facets = facets.callCNV {} {vcf = tnpairResult.platypusVars; bams = with tnpairResult.alignments; [ normal tumour ];}; cnvkit = cnvkitResults.cnvs; "cnvkit.pdf" = cnvkitResults.plot; |