diff options
| author | Justin Bedo <cu@cua0.org> | 2019-08-16 09:34:08 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-08-16 09:34:08 +1000 |
| commit | 71a479e17dd618e56a749b4a4d2f78bfd1428c1a (patch) | |
| tree | 17e5dd49b97ccf4dd14ce23e5cda0c2bf2f1b4f9 /test-tnpair.nix | |
| parent | 67c8e952e0ac1548b8c6a33eca9fb46638c5479c (diff) | |
mosdepth: add test
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 0f2b55d..0e082d6 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -86,6 +86,7 @@ let "${tnpair.tumour.name}.fastqc.1" = check-fastqc tnpair.tumour.files.input1; "${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files; snver = snver.call { ploidy=1; } (with tnpairResult.alignments; [ normal tumour ]); + mosdepth = mosdepth.plot {} { inputs = mapAttrsToList (_: mosdepth.depth {}) tnpairResult.alignments; names = [ "seq1" "seq2" ]; }; inherit alignments; }; |