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authorJustin Bedo <cu@cua0.org>2019-08-16 09:34:08 +1000
committerJustin Bedo <cu@cua0.org>2019-08-16 09:34:08 +1000
commit71a479e17dd618e56a749b4a4d2f78bfd1428c1a (patch)
tree17e5dd49b97ccf4dd14ce23e5cda0c2bf2f1b4f9
parent67c8e952e0ac1548b8c6a33eca9fb46638c5479c (diff)
mosdepth: add test
-rw-r--r--test-tnpair.nix1
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 0f2b55d..0e082d6 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -86,6 +86,7 @@ let
"${tnpair.tumour.name}.fastqc.1" = check-fastqc tnpair.tumour.files.input1;
"${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files;
snver = snver.call { ploidy=1; } (with tnpairResult.alignments; [ normal tumour ]);
+ mosdepth = mosdepth.plot {} { inputs = mapAttrsToList (_: mosdepth.depth {}) tnpairResult.alignments; names = [ "seq1" "seq2" ]; };
inherit alignments;
};