aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--test-tnpair.nix1
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 0f2b55d..0e082d6 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -86,6 +86,7 @@ let
"${tnpair.tumour.name}.fastqc.1" = check-fastqc tnpair.tumour.files.input1;
"${tnpair.tumour.name}.fastp" = check-fastp tnpair.tumour.files;
snver = snver.call { ploidy=1; } (with tnpairResult.alignments; [ normal tumour ]);
+ mosdepth = mosdepth.plot {} { inputs = mapAttrsToList (_: mosdepth.depth {}) tnpairResult.alignments; names = [ "seq1" "seq2" ]; };
inherit alignments;
};