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| author | Justin Bedo <cu@cua0.org> | 2019-08-15 14:27:43 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-08-15 14:27:43 +1000 |
| commit | 92da3257c6867b6f54943e39345ab295703a30c4 (patch) | |
| tree | 2335f6bcf107bea657b21386eaeda194d969c7ec /test-tnpair.nix | |
| parent | 3e037c4d706f5ac02c663a8d7f56703373785d29 (diff) | |
hisat2: init
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index eaabd9f..0f2b55d 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -61,6 +61,7 @@ let "minimap2-normal.bam" = minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files; "snap-normal.bam" = snap.align {inherit ref; } tnpair.normal.files; "${tnpair.tumour.name}.flagstat" = flagstat tnpairResult.alignments.tumour; + "hisat2-normal.bam" = hisat2.align {inherit ref;} tnpair.normal.files; }; testNaming = linkOutputs { |