diff options
| author | Justin Bedo <cu@cua0.org> | 2019-01-09 16:38:42 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-01-09 16:38:42 +1100 |
| commit | c3babc9eb65dc8c56d07ce8a6ee0d8c03bbd223e (patch) | |
| tree | f7d88ec21635664781c7c79fe0ea6f962ae38004 /tools/bwa-index.nix | |
| parent | 9fd618d0305d4927c8d86fc37238d1216e401967 (diff) | |
large refactor
- use bionix.pkgs instead of nixpkgs
- replace stdenv.mkDerivation with stage
Diffstat (limited to 'tools/bwa-index.nix')
| -rw-r--r-- | tools/bwa-index.nix | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/tools/bwa-index.nix b/tools/bwa-index.nix index c879bc4..17b651f 100644 --- a/tools/bwa-index.nix +++ b/tools/bwa-index.nix @@ -1,19 +1,18 @@ { bionix -, nixpkgs , flags ? null }: ref: -with nixpkgs; +with bionix; with lib; -with bionix.types; +with types; assert (matchFiletype "bwa-index" { fa = _: true; } ref); -stdenv.mkDerivation { +stage { name = "bwa-index"; - buildInputs = [ bwa ]; + buildInputs = with pkgs; [ bwa ]; buildCommand = '' ln -s ${ref} ref.fa bwa index ${optionalString (flags != null) flags} ref.fa |