diff options
| author | Justin Bedo <cu@cua0.org> | 2019-09-06 16:13:53 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-09-06 16:18:39 +1000 |
| commit | 7c61159d7ed296fce82c7518af4a4936e55990fd (patch) | |
| tree | 44d7b275b36395f425b79977dccd9e991ec4546b /tools | |
| parent | 8110c2ce6ab558de28c051c0a3eaccdcb97a82db (diff) | |
strelka: also strip command line from output
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/strelka-call.nix | 1 | ||||
| -rw-r--r-- | tools/strelka-callSomatic.nix | 1 |
2 files changed, 2 insertions, 0 deletions
diff --git a/tools/strelka-call.nix b/tools/strelka-call.nix index a37c2aa..74dfd0b 100644 --- a/tools/strelka-call.nix +++ b/tools/strelka-call.nix @@ -48,6 +48,7 @@ out = stage { g=$(basename $f .gz) sed -i '/^##fileDate/d' $g sed -i '/^##startTime/d' $g + sed -i '/^##cmd/d' $g done mv variants.vcf $out ''; diff --git a/tools/strelka-callSomatic.nix b/tools/strelka-callSomatic.nix index ec57b8c..fd58d33 100644 --- a/tools/strelka-callSomatic.nix +++ b/tools/strelka-callSomatic.nix @@ -52,6 +52,7 @@ out = stage { g=$(basename $f .gz) sed -i '/^##fileDate/d' $g sed -i '/^##startTime/d' $g + sed -i '/^##cmd/d' $g done mv somatic.indels.vcf $indels mv somatic.snvs.vcf $snvs |