diff options
| author | Justin Bedo <cu@cua0.org> | 2018-10-23 22:43:03 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2018-10-23 22:43:03 +1100 |
| commit | c4777315bcb327e6cd1df9cc09c0afc49271769c (patch) | |
| tree | ef5ef7b20a67611236e72aa30a0dabcff4b9dd61 /tools | |
| parent | 3acc6ee91d3394c5e98436939936e8ab93b3c8ae (diff) | |
Allow building bwa-mem with one core
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/bwa-mem.nix | 3 |
1 files changed, 1 insertions, 2 deletions
diff --git a/tools/bwa-mem.nix b/tools/bwa-mem.nix index 0d0f7d8..3208e48 100644 --- a/tools/bwa-mem.nix +++ b/tools/bwa-mem.nix @@ -29,8 +29,7 @@ in stdenv.mkDerivation { done cores=$(echo $NIX_BUILD_CORES ${optionalString bamOutput "- 1"} | bc) if [[ $cores -lt 1 ]] ; then - >&2 echo "not enough build cores" - exit 1 + cores=1 fi bwa mem ${optionalString (flags != null) flags} -t $cores ref.fa ${fq input1} \ ${optionalString (input2 != null) (fq input2)} \ |