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-rw-r--r--test-tnpair.nix4
1 files changed, 2 insertions, 2 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 153a4c3..2ea93ae 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -55,8 +55,8 @@ let
(ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf")
(ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf")
(ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam")
- #(ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam")
- #(ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam")
+ (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam")
+ (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam")
(ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss")
(ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2")
(ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3")