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authorJustin Bedo <cu@cua0.org>2019-05-09 13:42:47 +1000
committerJustin Bedo <cu@cua0.org>2019-05-09 13:42:47 +1000
commit795c1ce6b03bfa1cefb628026e08371f39b86296 (patch)
tree9afd0f0228f93c0cdb25dac39b5db145282135fe
parent8f4b321c07f13ebe8597d1ab4ef3c6bda16f38af (diff)
test: enable minimap and snap tests
-rw-r--r--test-tnpair.nix4
1 files changed, 2 insertions, 2 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index 153a4c3..2ea93ae 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -55,8 +55,8 @@ let
(ln (strelka.snvs tnpairResult.variants) "strelka.snvs.vcf")
(ln (strelka.variants tnpairResult.glvariants) "strelka.gl.vcf")
(ln (bowtie.align {inherit ref;} tnpair.normal.files) "alignments/bowtie-normal.bam")
- #(ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam")
- #(ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam")
+ (ln (minimap2.align {inherit ref; preset = "sr"; } tnpair.normal.files) "alignments/minimap2-normal.bam")
+ (ln (snap.align {inherit ref; } tnpair.normal.files) "alignments/snap-normal.bam")
(ln (gridss.callVariants {} (with tnpairResult.alignments; [normal tumour])) "gridss")
(ln (gridss.call (with tnpairResult.alignments; [normal tumour])) "gridss2")
(ln (gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour])) "gridss3")