diff options
-rw-r--r-- | test-tnpair.nix | 2 | ||||
-rw-r--r-- | tools/fastp-check.nix (renamed from tools/fastp-run.nix) | 0 | ||||
-rw-r--r-- | tools/fastp.nix | 2 |
3 files changed, 2 insertions, 2 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 802a2bb..153a4c3 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -16,7 +16,7 @@ let nameSort = samtools.sort {nameSort = true;}; flagstat = samtools.flagstat {}; check-fastqc = fastqc.check {}; - check-fastp = fastp.run {}; + check-fastp = fastp.check {}; callVariants = strelka.callSomatic {}; markdup = samtools.markdup {}; fixmate = samtools.fixmate {}; diff --git a/tools/fastp-run.nix b/tools/fastp-check.nix index c7cbb3c..c7cbb3c 100644 --- a/tools/fastp-run.nix +++ b/tools/fastp-check.nix diff --git a/tools/fastp.nix b/tools/fastp.nix index 52c9041..90f6c1d 100644 --- a/tools/fastp.nix +++ b/tools/fastp.nix @@ -4,6 +4,6 @@ with bionix; rec { app = pkgs.callPackage ./fastp-app.nix {}; - run = callBionixE ./fastp-run.nix; + check = callBionixE ./fastp-check.nix; } |