aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2024-11-12deprecate platypusHEADmasterJustin Bedo
2024-10-31migrate zig code and target baseline cpuJustin Bedo
2024-10-31bwa-mem2: 2.1 -> 2.2.1Justin Bedo
2024-06-04strip-store-paths: update to latest zigJustin Bedo
2023-12-06strip-store-paths: update for latest zigJustin Bedo
2023-10-10linkOutputs: fix shell interpretation of destination nameJustin Bedo
2023-10-10ampliconarchitect: initJustin Bedo
2023-03-27samtools.queryRegion: queries regions from a fasta filelezhou8
2023-02-27platypus.callVariants: strip platypus options from VCF outputlezhou8
2022-11-15fix missing flag in examples READMEJustin Bedo
2022-10-24octopus.call: fix naming error in throwJustin Bedo
2022-10-24samtools.view,mosdepth.depth: add targets parameterJustin Bedo
2022-09-26last: align only a single fastq fileJustin Bedo
2022-08-23last: update for latest versionJustin Bedo
2022-06-19hatchet: include gurobi dependency if neededJustin Bedo
2022-06-19quip: fix storing matesJustin Bedo
2022-05-18quip: wrap in exec contextJustin Bedo
2022-05-16quip: initJustin Bedo
2022-05-16HATCHet: 0.4.9 -> 0.4.14Justin Bedo
2022-03-09octopus: strip ARGV line to prevent huge closuresJustin Bedo
2022-02-28remove lumpy from testingJustin Bedo
2022-02-21linkOutputs: ignore null valuesJustin Bedo
2022-02-09whisper: RG line supportJustin Bedo
2022-02-09whisper: fix sorting for sam outputJustin Bedo
2022-02-09don't strip store paths from bamsJustin Bedo
2022-02-08gridss: 2.13.1 -> 2.13.2Justin Bedo
2022-02-07pizzly: initJustin Bedo
2022-02-07hatchet: initJustin Bedo
2022-01-25add tabix indexingJustin Bedo
2022-01-25add bgz support and fix nested compression supportJustin Bedo
2022-01-21linkOutputs: rewrite to use script instead of environment variableJustin Bedo
2022-01-17snpeff.dbnsfp: paramterise fieldsJustin Bedo
2022-01-17octopus: allow targets to be derivationsJustin Bedo
2022-01-12gridss.filterSomatic: missing fileJustin Bedo
2022-01-12gridss: add somatic variant filteringJustin Bedo
2022-01-06strip-store-paths: allow no filesJustin Bedo
2022-01-06xenomapper: update location of packageJustin Bedo
2022-01-06strip: rollback simplificationJustin Bedo
2022-01-05gridss: 2.13.0 -> 2.13.1Justin Bedo
2022-01-05fix bug in strip-store-pathsJustin Bedo
2022-01-04samtools-flagstat: fix nameJustin Bedo
2022-01-01update to zig 0.9.0Justin Bedo
2022-01-01update copyright yearJustin Bedo
2021-12-20rewrite strip store pathsJustin Bedo
2021-12-20facets.callCNV: refactor interfaceJustin Bedo
2021-12-18update dbNSFP hashesJustin Bedo
2021-12-14tests: test RG line functionalityJustin Bedo
2021-12-14subread: initJustin Bedo
2021-12-06parameterise RG line as nix attribute setJustin Bedo
2021-12-06gridss: 2.12.2 -> 2.13.0Justin Bedo
generated by cgit v1.2.3 (git 2.25.1) at 2024-12-24 17:39:09 +0000