diff options
| author | Justin Bedo <cu@cua0.org> | 2022-02-23 13:49:49 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2022-02-28 20:52:48 +1100 |
| commit | e67120ee854880c6c47628baddb6218adfeec81c (patch) | |
| tree | 249dd98d3caed2136e7f7e3cb631ecdeb945087a | |
| parent | c2514beaeaaeb87d48f0780e089758eb61d96629 (diff) | |
remove lumpy from testing
Deprecated upstream due to python2.
| -rw-r--r-- | test-tnpair.nix | 1 |
1 files changed, 0 insertions, 1 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index e7d5d17..679cc67 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -82,7 +82,6 @@ let "strelka.snvs.vcf" = tnpairResult.variants.snvs; "strelka.gl.vcf" = tnpairResult.glvariants; delly = delly.call { } (with tnpairResult.alignments; [ normal tumour ]); - lumpy = lumpy.call { } (with tnpairResult.alignments; [ normal tumour ]); manta = manta.call { } (with tnpairResult.alignments; { normals = [ normal tumour ]; }); mantaTN = manta.call { } (with tnpairResult.alignments; { normals = [ normal ]; inherit tumour; }); mantaT = manta.call { } (with tnpairResult.alignments; { inherit tumour; }); |