| Age | Commit message (Expand) | Author |
|---|
| 2018-10-23 | Simplify infercnv-app | Justin Bedo |
| 2018-10-23 | Wrap inferCNV | Justin Bedo |
| 2018-10-22 | name qsub with name of derivation: fixes #7 | Justin Bedo |
| 2018-10-17 | rename sigterm patch | Justin Bedo |
| 2018-10-09 | Simplify default to error in types | Justin Bedo |
| 2018-10-08 | Add identity to compression functions | Justin Bedo |
| 2018-10-08 | Fix type in samtools-view | Justin Bedo |
| 2018-10-05 | implement types | Justin Bedo |
| 2018-10-04 | Add defQsub function | Justin Bedo |
| 2018-10-04 | Refactor references | Justin Bedo |
| 2018-10-04 | Add def function to simplify overrides | Justin Bedo |
| 2018-10-04 | Add qsub function to override all attributes | Justin Bedo |
| 2018-10-04 | Refactor to use bionix tree directly | Justin Bedo |
| 2018-10-04 | add patch for nix to send SIGTERM instead of SIGKILL | Justin Bedo |
| 2018-10-04 | Fix typo in reference name | Justin Bedo |
| 2018-10-04 | Stuff to match & points of difference | l-d-s |
| 2018-10-03 | Use http rather than ftp for mm10 | l-d-s |
| 2018-10-03 | fix indenting and syntax error | Justin Bedo |
| 2018-10-03 | refactor reference location to lib | Justin Bedo |
| 2018-10-03 | Add GRCm38-p6 | Justin Bedo |
| 2018-10-03 | sha256 hash for mm10 | l-d-s |
| 2018-10-02 | Add mm10 reference (UCSC) | l-d-s |
| 2018-09-28 | Add crumble | Justin Bedo |
| 2018-09-28 | Change mosdepth plotting to multisample | Justin Bedo |
| 2018-09-28 | Improve cleanup of qsub | Justin Bedo |
| 2018-09-28 | Fix missing index for mosdepth | Justin Bedo |
| 2018-09-27 | Allow flag passing to bwa index | Justin Bedo |
| 2018-09-27 | Allow changing tmpdir for qsub | Justin Bedo |
| 2018-09-26 | Missing GRIDSS files | Justin Bedo |
| 2018-09-26 | Add GRIDSS | Justin Bedo |
| 2018-09-26 | move bwa index to parameters | Justin Bedo |
| 2018-09-26 | Fix mosdepth | Justin Bedo |
| 2018-09-26 | Fix fastqc | Justin Bedo |
| 2018-09-26 | fix qsub expression | Justin Bedo |
| 2018-09-26 | Add qsub to bionix top level | Justin Bedo |
| 2018-09-26 | Add flagstat and fastqc | Justin Bedo |
| 2018-09-26 | refactor, add mosdepth, and fixes for bwa | Justin Bedo |
| 2018-09-24 | use a map in the test pipeline | Justin Bedo |
| 2018-09-24 | Working test-tnpair | l-d-s |
| 2018-09-24 | Ignore result | l-d-s |
| 2018-09-20 | Missing reference for example | Justin Bedo |
| 2018-09-20 | Add example TNPair | Justin Bedo |
| 2018-09-20 | Wrap some tools and make an example pipeline | Justin Bedo |
| 2018-09-07 | Fix clobbered title change | Justin Bedo |
| 2018-09-07 | Editing | Justin Bedo |
| 2018-09-07 | Changes from Tony | Justin Bedo |
| 2018-09-06 | Take 2, sent to TP | l-d-s |
| 2018-09-06 | Editing | Justin Bedo |
| 2018-09-06 | Small deletion | l-d-s |
| 2018-09-06 | Attempt at TP suggestions | l-d-s |
