Age | Commit message (Expand) | Author |
2025-03-14 | migrate to latest zig stdHEADmaster | Justin Bedo |
2024-11-12 | deprecate platypus | Justin Bedo |
2024-10-31 | migrate zig code and target baseline cpu | Justin Bedo |
2024-10-31 | bwa-mem2: 2.1 -> 2.2.1 | Justin Bedo |
2024-06-04 | strip-store-paths: update to latest zig | Justin Bedo |
2023-12-06 | strip-store-paths: update for latest zig | Justin Bedo |
2023-10-10 | linkOutputs: fix shell interpretation of destination name | Justin Bedo |
2023-10-10 | ampliconarchitect: init | Justin Bedo |
2023-03-27 | samtools.queryRegion: queries regions from a fasta file | lezhou8 |
2023-02-27 | platypus.callVariants: strip platypus options from VCF output | lezhou8 |
2022-11-15 | fix missing flag in examples README | Justin Bedo |
2022-10-24 | octopus.call: fix naming error in throw | Justin Bedo |
2022-10-24 | samtools.view,mosdepth.depth: add targets parameter | Justin Bedo |
2022-09-26 | last: align only a single fastq file | Justin Bedo |
2022-08-23 | last: update for latest version | Justin Bedo |
2022-06-19 | hatchet: include gurobi dependency if needed | Justin Bedo |
2022-06-19 | quip: fix storing mates | Justin Bedo |
2022-05-18 | quip: wrap in exec context | Justin Bedo |
2022-05-16 | quip: init | Justin Bedo |
2022-05-16 | HATCHet: 0.4.9 -> 0.4.14 | Justin Bedo |
2022-03-09 | octopus: strip ARGV line to prevent huge closures | Justin Bedo |
2022-02-28 | remove lumpy from testing | Justin Bedo |
2022-02-21 | linkOutputs: ignore null values | Justin Bedo |
2022-02-09 | whisper: RG line support | Justin Bedo |
2022-02-09 | whisper: fix sorting for sam output | Justin Bedo |
2022-02-09 | don't strip store paths from bams | Justin Bedo |
2022-02-08 | gridss: 2.13.1 -> 2.13.2 | Justin Bedo |
2022-02-07 | pizzly: init | Justin Bedo |
2022-02-07 | hatchet: init | Justin Bedo |
2022-01-25 | add tabix indexing | Justin Bedo |
2022-01-25 | add bgz support and fix nested compression support | Justin Bedo |
2022-01-21 | linkOutputs: rewrite to use script instead of environment variable | Justin Bedo |
2022-01-17 | snpeff.dbnsfp: paramterise fields | Justin Bedo |
2022-01-17 | octopus: allow targets to be derivations | Justin Bedo |
2022-01-12 | gridss.filterSomatic: missing file | Justin Bedo |
2022-01-12 | gridss: add somatic variant filtering | Justin Bedo |
2022-01-06 | strip-store-paths: allow no files | Justin Bedo |
2022-01-06 | xenomapper: update location of package | Justin Bedo |
2022-01-06 | strip: rollback simplification | Justin Bedo |
2022-01-05 | gridss: 2.13.0 -> 2.13.1 | Justin Bedo |
2022-01-05 | fix bug in strip-store-paths | Justin Bedo |
2022-01-04 | samtools-flagstat: fix name | Justin Bedo |
2022-01-01 | update to zig 0.9.0 | Justin Bedo |
2022-01-01 | update copyright year | Justin Bedo |
2021-12-20 | rewrite strip store paths | Justin Bedo |
2021-12-20 | facets.callCNV: refactor interface | Justin Bedo |
2021-12-18 | update dbNSFP hashes | Justin Bedo |
2021-12-14 | tests: test RG line functionality | Justin Bedo |
2021-12-14 | subread: init | Justin Bedo |
2021-12-06 | parameterise RG line as nix attribute set | Justin Bedo |