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2021-11-25Fix typo in example READMEJustin Bedo
2021-11-23update contact information in READMEJustin Bedo
2021-11-03update ex-tnpair cluster exampleJustin Bedo
2021-10-29treewide reformatting and simplificationJustin Bedo
2021-10-29octopus: write region lists to region filesJustin Bedo
2021-10-14gridss: 2.12.0 -> 2.12.2Justin Bedo
2021-10-14Revert "gridss: 2.12.0 -> 2.12.1"Justin Bedo
2021-10-08Update READMEJustin Bedo
2021-09-21gridss: specify cores for all multithreaded phasesJustin Bedo
2021-09-16gridss: 2.12.0 -> 2.12.1Justin Bedo
2021-08-25fastp: use nixpkgs versionJustin Bedo
2021-08-02gridss: drop softclip to split read conversionJustin Bedo
2021-07-28bugfix: use unsorted type for alignment outputJustin Bedo
2021-06-25linkOutputs: passthrough the inputs to make it easier for downstream expressi...Justin Bedo
2021-05-25gridss: 2.11.1 -> 2.12.0Justin Bedo
2021-04-20gridss: 2.10.2 -> 2.11.1Justin Bedo
2021-03-08facets: use tagged version of pctGCdataJustin Bedo
2021-02-23samtools-view: support specifying outfmt via stringsJustin Bedo
2021-02-19samtools-index: support cram indexingJustin Bedo
2021-02-16Add -I flags to example invocationsJustin Bedo
2021-02-08refactor slurm implementation to allow for overlaysJustin Bedo
2021-02-08don't recursive update overlaysJustin Bedo
2021-02-08add flake.nixJustin Bedo
2021-02-03add inline documentationJustin Bedo
2021-02-03reinstate all testsJustin Bedo
2021-02-03bwa-mem2: 2.0 -> 2.1Justin Bedo
2021-01-25kallisto-quant: strip call form run infoJustin Bedo
2021-01-20facets: 0.5.14 -> 0.6.1Justin Bedo
2021-01-19Update README.mdMatthew Wakefield
2020-12-21snpeff: dbnsfp updateJustin Bedo
2020-12-14gridss: 2.10.1 -> 2.10.2Justin Bedo
2020-11-30gridss.assemble: fix workdir manipulationJustin Bedo
2020-11-18add encode blacklist to referencesJustin Bedo
2020-11-18rewrite cluster example to usse overlayJustin Bedo
2020-11-18switch to unchecked ADTsJustin Bedo
2020-11-17implement overlaysJustin Bedo
2020-11-16sambamba: initJustin Bedo
2020-11-03update example to not use explicit path referenceJustin Bedo
2020-11-02star: initJustin Bedo
2020-11-02gridss: 2.10.0 -> 2.10.1Justin Bedo
2020-10-15gridss: 2.9.4 -> 2.10.0Justin Bedo
2020-10-13mutect: fix app expression and tag output as vcfJustin Bedo
2020-09-02gridss: shard assembly into 10 pieces by defaultJustin Bedo
2020-09-02gridss: add missing flags parameterJustin Bedo
2020-08-25whisper: app expression merged into nixpkgsJustin Bedo
2020-08-09Update README.mdJustin Bedő
2020-08-10hisat2: add index prefixJustin Bedo
2020-08-10bwa: alt regex generalisationJustin Bedo
2020-08-10bwa2: update to releaseJustin Bedo
2020-07-16gridss: 2.9.1 -> 2.9.4Justin Bedo
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