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authorJustin Bedo <cu@cua0.org>2021-07-29 18:27:34 +1000
committerJustin Bedo <cu@cua0.org>2021-07-29 18:27:34 +1000
commitc981a0dbd43709dbc5007c04fe550b9dcd0860c7 (patch)
tree47f02dd81b82dd35a764b192b7cba3daa2e5ae42
parent95a461636cc65274ec80aea2d7b0316dfe13496f (diff)
reword readmeHEADmaster
-rw-r--r--README4
1 files changed, 2 insertions, 2 deletions
diff --git a/README b/README
index 063dcc5..d00b226 100644
--- a/README
+++ b/README
@@ -2,7 +2,7 @@ This is a reimplementation of Xenomapper [1] in Haskell. Unlike the
orginal it is significantly more focused in scope: only primary specific
alignments are output.
-Example usage: "xenomapper primary-specific.bam primary.bam secondary.bam"
+Example usage: "xenomapper output.bam primary-input.bam secondary-input.bam"
The first argument is the output bam path, and the subsequent are the
primary and secondary alignments. NB: the inputs must be name sorted
@@ -18,7 +18,7 @@ to build, or if you have already cloned the repository then simply
in the root. You can also just:
- nix run git://vk3.wtf/xenomapper-hs.git primary-specific.bam primary.bam secondary.bam
+ nix run git://vk3.wtf/xenomapper-hs.git output.bam primary-input.bam secondary-input.bam
--
1: https://github.com/genomematt/xenomapper