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| author | Justin Bedo <cu@cua0.org> | 2019-05-09 13:42:29 +1000 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-05-09 13:42:29 +1000 |
| commit | 8f4b321c07f13ebe8597d1ab4ef3c6bda16f38af (patch) | |
| tree | 300c68b1fec139221190b3643a560da4bbc82819 /test-tnpair.nix | |
| parent | e1bb4233c72b0af954ec560759c408d92b2cea15 (diff) | |
fastp: rename run to check for consistency with fastqc
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 802a2bb..153a4c3 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -16,7 +16,7 @@ let nameSort = samtools.sort {nameSort = true;}; flagstat = samtools.flagstat {}; check-fastqc = fastqc.check {}; - check-fastp = fastp.run {}; + check-fastp = fastp.check {}; callVariants = strelka.callSomatic {}; markdup = samtools.markdup {}; fixmate = samtools.fixmate {}; |