| Age | Commit message (Expand) | Author |
|---|
| 2018-11-20 | Add some typed fetchurl functions | Justin Bedo |
| 2018-11-15 | Fix up gridss config file. | l-d-s |
| 2018-11-15 | test-tnpair: avoid gridss.call while it's broken | l-d-s |
| 2018-11-15 | gridss.softClipsToSplitReads: sort -> sorting | l-d-s |
| 2018-11-15 | Syntax. | l-d-s |
| 2018-11-15 | Ignore temporary files. | l-d-s |
| 2018-11-15 | Need to test config != null | l-d-s |
| 2018-11-15 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s |
| 2018-11-15 | Ignore .DS_Store | l-d-s |
| 2018-11-15 | gridss.softClipsToSplitReads: sort ordering is not preserved | Justin Bedo |
| 2018-11-14 | Add ensembl mouse transcriptome | Justin Bedo |
| 2018-11-13 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s |
| 2018-11-12 | Attempt to integrate config file into GRIDSS stage | l-d-s |
| 2018-11-12 | Function to great ini-style gridss config file. | l-d-s |
| 2018-11-07 | Fix to gridss. | l-d-s |
| 2018-11-07 | Add bwa to softClipsToSplitReads | l-d-s |
| 2018-11-02 | Allow bwa-mem to take gzipped fastq inputs | Justin Bedo |
| 2018-11-02 | kallisto: init | Justin Bedo |
| 2018-11-01 | samtools-sort: don't sort if already sorted | Justin Bedo |
| 2018-10-29 | Split gridss into constituents | Justin Bedo |
| 2018-10-29 | bwa-mem: BWA output is query name sorted | Justin Bedo |
| 2018-10-29 | init: samtools-markdup | Justin Bedo |
| 2018-10-29 | init: samtools-fixmate | Justin Bedo |
| 2018-10-26 | init: mutect | Justin Bedo |
| 2018-10-26 | init: samtools-dict | Justin Bedo |
| 2018-10-26 | init: cosmic & dbsnp for grch38 | Justin Bedo |
| 2018-10-25 | Improve type safety of samtools-merge | Justin Bedo |
| 2018-10-25 | Simplify types for sorting | Justin Bedo |
| 2018-10-24 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s |
| 2018-10-24 | Add merge to samtools. | l-d-s |
| 2018-10-24 | Simplify test expression | Justin Bedo |
| 2018-10-24 | Fix platypus bug | Justin Bedo |
| 2018-10-23 | Allow building bwa-mem with one core | Justin Bedo |
| 2018-10-23 | Simplify infercnv-app | Justin Bedo |
| 2018-10-23 | Wrap inferCNV | Justin Bedo |
| 2018-10-22 | name qsub with name of derivation: fixes #7 | Justin Bedo |
| 2018-10-17 | rename sigterm patch | Justin Bedo |
| 2018-10-09 | Simplify default to error in types | Justin Bedo |
| 2018-10-08 | Add identity to compression functions | Justin Bedo |
| 2018-10-08 | Fix type in samtools-view | Justin Bedo |
| 2018-10-05 | implement types | Justin Bedo |
| 2018-10-04 | Add defQsub function | Justin Bedo |
| 2018-10-04 | Refactor references | Justin Bedo |
| 2018-10-04 | Add def function to simplify overrides | Justin Bedo |
| 2018-10-04 | Add qsub function to override all attributes | Justin Bedo |
| 2018-10-04 | Refactor to use bionix tree directly | Justin Bedo |
| 2018-10-04 | add patch for nix to send SIGTERM instead of SIGKILL | Justin Bedo |
| 2018-10-04 | Fix typo in reference name | Justin Bedo |
| 2018-10-04 | Stuff to match & points of difference | l-d-s |
| 2018-10-03 | Use http rather than ftp for mm10 | l-d-s |
