| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-01-15 | strelka: add germline calling | Justin Bedo | |
| 2019-01-10 | facets: init | Justin Bedo | |
| 2019-01-09 | large refactor | Justin Bedo | |
| - use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage | |||
| 2018-12-19 | link: introduce high-level linking functions | Justin Bedo | |
| 2018-12-10 | bowtie: init | Justin Bedo | |
| 2018-11-29 | Revert "test-tnpair: avoid gridss.call while it's broken" | l-d-s | |
| This reverts commit 01401aaee74dac39e0502688654ef02771a88cd7. | |||
| 2018-11-15 | test-tnpair: avoid gridss.call while it's broken | l-d-s | |
| 2018-10-29 | Split gridss into constituents | Justin Bedo | |
| Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10. | |||
| 2018-10-25 | Improve type safety of samtools-merge | Justin Bedo | |
| 2018-10-05 | implement types | Justin Bedo | |
| 2018-10-04 | Refactor references | Justin Bedo | |
| 2018-10-04 | Add def function to simplify overrides | Justin Bedo | |
| 2018-10-04 | Refactor to use bionix tree directly | Justin Bedo | |
| 2018-09-26 | Add flagstat and fastqc | Justin Bedo | |
| 2018-09-26 | refactor, add mosdepth, and fixes for bwa | Justin Bedo | |
| 2018-09-24 | use a map in the test pipeline | Justin Bedo | |
| 2018-09-24 | Working test-tnpair | l-d-s | |
| 2018-09-20 | Add example TNPair | Justin Bedo | |
 |
index : bionix.git | |
| Functional, highly-reproducible bioinformatics pipelines |
| aboutsummaryrefslogtreecommitdiff |
path: root/test-tnpair.nix