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path: root/tools/bwa-mem.nix
AgeCommit message (Collapse)Author
2021-12-06parameterise RG line as nix attribute setJustin Bedo
Allows more seamless transitioning between alingment algorithms
2021-10-29treewide reformatting and simplificationJustin Bedo
- simplify with statix - reformat with nixpkgs-fmt
2021-07-28bugfix: use unsorted type for alignment outputJustin Bedo
Most aligners are only pseudo-name sorted (i.e., pairs adjacant).
2019-03-15add multicore passthru flagJustin Bedo
2019-01-09large refactorJustin Bedo
- use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage
2018-11-02Allow bwa-mem to take gzipped fastq inputsJustin Bedo
2018-10-29bwa-mem: BWA output is query name sortedJustin Bedo
2018-10-25Simplify types for sortingJustin Bedo
2018-10-23Allow building bwa-mem with one coreJustin Bedo
2018-10-05implement typesJustin Bedo
2018-10-04Refactor referencesJustin Bedo
2018-10-04Refactor to use bionix tree directlyJustin Bedo
2018-09-26move bwa index to parametersJustin Bedo
2018-09-26refactor, add mosdepth, and fixes for bwaJustin Bedo