| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-02-09 | don't strip store paths from bams | Justin Bedo | |
| Due to BAM compression attempting to strip store paths is a waste of time. | |||
| 2021-12-06 | parameterise RG line as nix attribute set | Justin Bedo | |
| Allows more seamless transitioning between alingment algorithms | |||
| 2021-10-29 | treewide reformatting and simplification | Justin Bedo | |
| - simplify with statix - reformat with nixpkgs-fmt | |||
| 2021-07-28 | bugfix: use unsorted type for alignment output | Justin Bedo | |
| Most aligners are only pseudo-name sorted (i.e., pairs adjacant). | |||
| 2019-03-15 | add multicore passthru flag | Justin Bedo | |
| 2019-01-09 | large refactor | Justin Bedo | |
| - use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage | |||
| 2018-11-02 | Allow bwa-mem to take gzipped fastq inputs | Justin Bedo | |
| 2018-10-29 | bwa-mem: BWA output is query name sorted | Justin Bedo | |
| 2018-10-25 | Simplify types for sorting | Justin Bedo | |
| 2018-10-23 | Allow building bwa-mem with one core | Justin Bedo | |
| 2018-10-05 | implement types | Justin Bedo | |
| 2018-10-04 | Refactor references | Justin Bedo | |
| 2018-10-04 | Refactor to use bionix tree directly | Justin Bedo | |
| 2018-09-26 | move bwa index to parameters | Justin Bedo | |
| 2018-09-26 | refactor, add mosdepth, and fixes for bwa | Justin Bedo | |
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index : bionix.git | |
| Functional, highly-reproducible bioinformatics pipelines |
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