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2020-11-30gridss.assemble: fix workdir manipulationJustin Bedo
2020-09-02gridss: shard assembly into 10 pieces by defaultJustin Bedo
2020-09-02gridss: add missing flags parameterJustin Bedo
2019-03-28gridss: less chatty logsJustin Bedo
2019-03-15add multicore passthru flagJustin Bedo
2019-01-09large refactorJustin Bedo
- use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage
2018-12-11Merge branch 'master' of https://github.com/PapenfussLab/bionixl-d-s
2018-12-11gridss: fix softClipsToSplitReads after assemblyJustin Bedo
2018-12-10gridss: add java heapSize arguments.l-d-s
2018-12-10gridss: fix tmpdir bug.l-d-s
2018-11-29Correct argument for gridss option filel-d-s
2018-11-29gridss: fix for nix installations outside of /nixJustin Bedo
2018-11-26Also need config for 'assemble' step.l-d-s
2018-11-22Merge branch 'master' of https://github.com/PapenfussLab/bionixl-d-s
2018-11-22gridss: restructure gridss pipelineJustin Bedo
2018-11-15Fix up gridss config file.l-d-s
2018-11-15Need to test config != nulll-d-s
2018-10-29Split gridss into constituentsJustin Bedo
Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10.
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