| Age | Commit message (Expand) | Author |
|---|
| 2023-10-10 | ampliconarchitect: init | Justin Bedo |
| 2023-03-27 | samtools.queryRegion: queries regions from a fasta file | lezhou8 |
| 2023-02-27 | platypus.callVariants: strip platypus options from VCF output | lezhou8 |
| 2022-10-24 | octopus.call: fix naming error in throw | Justin Bedo |
| 2022-10-24 | samtools.view,mosdepth.depth: add targets parameter | Justin Bedo |
| 2022-09-26 | last: align only a single fastq file | Justin Bedo |
| 2022-08-23 | last: update for latest version | Justin Bedo |
| 2022-06-19 | hatchet: include gurobi dependency if needed | Justin Bedo |
| 2022-06-19 | quip: fix storing mates | Justin Bedo |
| 2022-05-18 | quip: wrap in exec context | Justin Bedo |
| 2022-05-16 | quip: init | Justin Bedo |
| 2022-05-16 | HATCHet: 0.4.9 -> 0.4.14 | Justin Bedo |
| 2022-03-09 | octopus: strip ARGV line to prevent huge closures | Justin Bedo |
| 2022-02-09 | whisper: RG line support | Justin Bedo |
| 2022-02-09 | whisper: fix sorting for sam output | Justin Bedo |
| 2022-02-09 | don't strip store paths from bams | Justin Bedo |
| 2022-02-08 | gridss: 2.13.1 -> 2.13.2 | Justin Bedo |
| 2022-02-07 | pizzly: init | Justin Bedo |
| 2022-02-07 | hatchet: init | Justin Bedo |
| 2022-01-25 | add tabix indexing | Justin Bedo |
| 2022-01-25 | add bgz support and fix nested compression support | Justin Bedo |
| 2022-01-17 | snpeff.dbnsfp: paramterise fields | Justin Bedo |
| 2022-01-17 | octopus: allow targets to be derivations | Justin Bedo |
| 2022-01-12 | gridss.filterSomatic: missing file | Justin Bedo |
| 2022-01-12 | gridss: add somatic variant filtering | Justin Bedo |
| 2022-01-06 | xenomapper: update location of package | Justin Bedo |
| 2022-01-05 | gridss: 2.13.0 -> 2.13.1 | Justin Bedo |
| 2022-01-04 | samtools-flagstat: fix name | Justin Bedo |
| 2021-12-20 | facets.callCNV: refactor interface | Justin Bedo |
| 2021-12-14 | subread: init | Justin Bedo |
| 2021-12-06 | parameterise RG line as nix attribute set | Justin Bedo |
| 2021-12-06 | gridss: 2.12.2 -> 2.13.0 | Justin Bedo |
| 2021-12-03 | genmap: init | Justin Bedo |
| 2021-10-29 | treewide reformatting and simplification | Justin Bedo |
| 2021-10-29 | octopus: write region lists to region files | Justin Bedo |
| 2021-10-14 | gridss: 2.12.0 -> 2.12.2 | Justin Bedo |
| 2021-10-14 | Revert "gridss: 2.12.0 -> 2.12.1" | Justin Bedo |
| 2021-09-21 | gridss: specify cores for all multithreaded phases | Justin Bedo |
| 2021-09-16 | gridss: 2.12.0 -> 2.12.1 | Justin Bedo |
| 2021-08-25 | fastp: use nixpkgs version | Justin Bedo |
| 2021-08-02 | gridss: drop softclip to split read conversion | Justin Bedo |
| 2021-07-28 | bugfix: use unsorted type for alignment output | Justin Bedo |
| 2021-05-25 | gridss: 2.11.1 -> 2.12.0 | Justin Bedo |
| 2021-04-20 | gridss: 2.10.2 -> 2.11.1 | Justin Bedo |
| 2021-03-08 | facets: use tagged version of pctGCdata | Justin Bedo |
| 2021-02-23 | samtools-view: support specifying outfmt via strings | Justin Bedo |
| 2021-02-19 | samtools-index: support cram indexing | Justin Bedo |
| 2021-02-03 | add inline documentation | Justin Bedo |
| 2021-02-03 | bwa-mem2: 2.0 -> 2.1 | Justin Bedo |
| 2021-01-25 | kallisto-quant: strip call form run info | Justin Bedo |
