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| author | Justin Bedo <cu@cua0.org> | 2019-12-17 12:30:59 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2019-12-17 12:32:45 +1100 |
| commit | e136c6f6027bcc125f3ab7885e37d79380a81e54 (patch) | |
| tree | 6bbb61cb3f8c014cbde69ff786ce166716ced868 /test-tnpair.nix | |
| parent | 4a7f5bfd34f53906901059c501aff9b5459eccf8 (diff) | |
Fix shard test
Diffstat (limited to 'test-tnpair.nix')
| -rw-r--r-- | test-tnpair.nix | 5 |
1 files changed, 1 insertions, 4 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix index 8d9dc88..ae88549 100644 --- a/test-tnpair.nix +++ b/test-tnpair.nix @@ -41,10 +41,7 @@ let glvariants = strelka.call {} (builtins.attrValues alignments); platypusVars = platypus.call {} (builtins.attrValues alignments); octopusVars = octopus.call {} (builtins.attrValues alignments); - shards = pipe [ - (shard.fastQPair 2) - (map (bwa.align {inherit ref;})) - ] normal.files; + shards = map (bwa.align {inherit ref;}) (shard.fastQPair 2 normal.files); }; tnpairResult = processPair tnpair; |