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2019-09-25grch38.31 → grch38.32Justin Bedo
2019-09-25add grch37Justin Bedo
2019-09-10gridss: 2.5.2 -> 2.6.0Justin Bedo
2019-09-06strelka: default callSomatic to snvsJustin Bedo
2019-09-06strelka: also strip command line from outputJustin Bedo
2019-09-06cnvkit: use python2Justin Bedo
2019-09-06test: disable strelka somatic testJustin Bedo
2019-09-06strelka: change outputs and taggingJustin Bedo
2019-09-06xenomapper: initJustin Bedo
2019-09-06CNVkit: split into multiple outputsJustin Bedo
2019-08-29CNVkit: merge into nixpkgsJustin Bedo
2019-08-29gridss: 2.5.1 -> 2.5.2Justin Bedo
2019-08-19snver: require labelled samplesJustin Bedo
2019-08-19snver: fix linkingJustin Bedo
2019-08-16mosdepth: fix renamingJustin Bedo
2019-08-16mosdepth: add testJustin Bedo
2019-08-15qsub: fix broken qsub treeJustin Bedo
2019-08-15gridss: 2.5.0 -> 2.5.1Justin Bedo
2019-08-15hisat2: initJustin Bedo
2019-08-15SNVer: init 0.5.3Justin Bedo
2019-07-28gridss: 2.4.0 -> 2.5.0Justin Bedo
2019-07-26Simplify exampleJustin Bedo
2019-07-26make stripping more liberalJustin Bedo
2019-07-08tests: add kallisto testJustin Bedo
2019-07-08ensembl: init gtf and gff3Justin Bedo
2019-07-08ensembl: abstract versionJustin Bedo
2019-07-08linkOutputs: refactor output linking expressionJustin Bedo
2019-07-03mosdepth-plot: allow selection of what to plotJustin Bedo
2019-07-03facets: fix execution environmentJustin Bedo
2019-07-03octopus: initial functionsJustin Bedo
2019-06-21gridss: 2.2.2 -> 2.4.0Justin Bedo
2019-06-21bwa-mem2: initJustin Bedo
2019-06-21Add CNVkit testJustin Bedo
2019-06-18slurm: fix bug with srunJustin Bedo
2019-06-14slurm,qsub: update to allow chaining of execution enginesJustin Bedo
2019-06-12grcm38: fix typo in name of ensembl transcriptsJustin Bedo
2019-06-11rewrite README documentationJustin Bedo
2019-06-11qsub: parameterise the path to PBS utilsJustin Bedo
2019-06-11slurm: allow salloc path to be overridden in stage callsJustin Bedo
2019-06-11references: fix file mode (remove executable flag)Justin Bedo
2019-06-06Merge branch 'master' of https://github.com/PapenfussLab/bionixl-d-s
2019-06-06picard-markDuplicates: fix input and output typesl-d-s
2019-06-04strip: handle non-buildCommand based stagesJustin Bedo
2019-05-30picard-markDuplicates: Check for _any_ sorting of inputl-d-s
2019-05-30Add picard-markDuplicates - need to handle sorting ambiguity.l-d-s
2019-05-30Merge branch 'add-picard' of mac2559:~/Projects/bionixl-d-s
2019-05-22Unested picard-markDuplicates.l-d-s
2019-05-21fastp: input filetypesJustin Bedo
2019-05-21fastp: split outputs and set filetypesJustin Bedo
2019-05-21Update README.mdl-d-s
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