| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-07-28 | bugfix: use unsorted type for alignment output | Justin Bedo | |
| Most aligners are only pseudo-name sorted (i.e., pairs adjacant). | |||
| 2020-11-30 | gridss.assemble: fix workdir manipulation | Justin Bedo | |
| 2020-09-02 | gridss: shard assembly into 10 pieces by default | Justin Bedo | |
| 2020-09-02 | gridss: add missing flags parameter | Justin Bedo | |
| 2019-03-28 | gridss: less chatty logs | Justin Bedo | |
| 2019-03-15 | add multicore passthru flag | Justin Bedo | |
| 2019-01-09 | large refactor | Justin Bedo | |
| - use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage | |||
| 2018-12-11 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s | |
| 2018-12-11 | gridss: fix softClipsToSplitReads after assembly | Justin Bedo | |
| 2018-12-10 | gridss: add java heapSize arguments. | l-d-s | |
| 2018-12-10 | gridss: fix tmpdir bug. | l-d-s | |
| 2018-11-29 | Correct argument for gridss option file | l-d-s | |
| 2018-11-29 | gridss: fix for nix installations outside of /nix | Justin Bedo | |
| 2018-11-26 | Also need config for 'assemble' step. | l-d-s | |
| 2018-11-22 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s | |
| 2018-11-22 | gridss: restructure gridss pipeline | Justin Bedo | |
| 2018-11-15 | Fix up gridss config file. | l-d-s | |
| 2018-11-15 | Need to test config != null | l-d-s | |
| 2018-10-29 | Split gridss into constituents | Justin Bedo | |
| Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10. | |||
 |
index : bionix.git | |
| Functional, highly-reproducible bioinformatics pipelines |
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