| Age | Commit message (Expand) | Author |
|---|
| 2019-08-16 | mosdepth: add test | Justin Bedo |
| 2019-08-15 | qsub: fix broken qsub tree | Justin Bedo |
| 2019-08-15 | gridss: 2.5.0 -> 2.5.1 | Justin Bedo |
| 2019-08-15 | hisat2: init | Justin Bedo |
| 2019-08-15 | SNVer: init 0.5.3 | Justin Bedo |
| 2019-07-28 | gridss: 2.4.0 -> 2.5.0 | Justin Bedo |
| 2019-07-26 | Simplify example | Justin Bedo |
| 2019-07-26 | make stripping more liberal | Justin Bedo |
| 2019-07-08 | tests: add kallisto test | Justin Bedo |
| 2019-07-08 | ensembl: init gtf and gff3 | Justin Bedo |
| 2019-07-08 | ensembl: abstract version | Justin Bedo |
| 2019-07-08 | linkOutputs: refactor output linking expression | Justin Bedo |
| 2019-07-03 | mosdepth-plot: allow selection of what to plot | Justin Bedo |
| 2019-07-03 | facets: fix execution environment | Justin Bedo |
| 2019-07-03 | octopus: initial functions | Justin Bedo |
| 2019-06-21 | gridss: 2.2.2 -> 2.4.0 | Justin Bedo |
| 2019-06-21 | bwa-mem2: init | Justin Bedo |
| 2019-06-21 | Add CNVkit test | Justin Bedo |
| 2019-06-18 | slurm: fix bug with srun | Justin Bedo |
| 2019-06-14 | slurm,qsub: update to allow chaining of execution engines | Justin Bedo |
| 2019-06-12 | grcm38: fix typo in name of ensembl transcripts | Justin Bedo |
| 2019-06-11 | rewrite README documentation | Justin Bedo |
| 2019-06-11 | qsub: parameterise the path to PBS utils | Justin Bedo |
| 2019-06-11 | slurm: allow salloc path to be overridden in stage calls | Justin Bedo |
| 2019-06-11 | references: fix file mode (remove executable flag) | Justin Bedo |
| 2019-06-06 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s |
| 2019-06-06 | picard-markDuplicates: fix input and output types | l-d-s |
| 2019-06-04 | strip: handle non-buildCommand based stages | Justin Bedo |
| 2019-05-30 | picard-markDuplicates: Check for _any_ sorting of input | l-d-s |
| 2019-05-30 | Add picard-markDuplicates - need to handle sorting ambiguity. | l-d-s |
| 2019-05-30 | Merge branch 'add-picard' of mac2559:~/Projects/bionix | l-d-s |
| 2019-05-22 | Unested picard-markDuplicates. | l-d-s |
| 2019-05-21 | fastp: input filetypes | Justin Bedo |
| 2019-05-21 | fastp: split outputs and set filetypes | Justin Bedo |
| 2019-05-21 | Update README.md | l-d-s |
| 2019-05-21 | Update README.md | l-d-s |
| 2019-05-16 | example: pass bionix to call.nix pipeline | Justin Bedo |
| 2019-05-16 | slurm: renamed from sbatch | Justin Bedo |
| 2019-05-16 | sbatch: allow path specification for salloc | Justin Bedo |
| 2019-05-16 | stage: fix multicore tagging to work with derivation overriding | Justin Bedo |
| 2019-05-15 | edit example to support passing bionix as argument | Justin Bedo |
| 2019-05-14 | strip: remove store paths from outputs to minimise closures | Justin Bedo |
| 2019-05-09 | strelka: rewrite to use multiple outputs | Justin Bedo |
| 2019-05-09 | test: enable minimap and snap tests | Justin Bedo |
| 2019-05-09 | fastp: rename run to check for consistency with fastqc | Justin Bedo |
| 2019-05-02 | shard-regex: split into separate file to fix exec issues | Justin Bedo |
| 2019-05-02 | shard: missing file | Justin Bedo |
| 2019-05-02 | shard: Implement some basic sharding for FQ files | Justin Bedo |
| 2019-05-02 | samtools-merge: detect correct sorting | Justin Bedo |
| 2019-05-01 | Add fastp. | l-d-s |
