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path: root/tools/gridss-callVariants.nix
AgeCommit message (Collapse)Author
2021-10-29treewide reformatting and simplificationJustin Bedo
- simplify with statix - reformat with nixpkgs-fmt
2019-04-07modify outputs to ensure determinismJustin Bedo
2019-03-28gridss: less chatty logsJustin Bedo
2019-03-15add multicore passthru flagJustin Bedo
2019-01-09large refactorJustin Bedo
- use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage
2018-12-10gridss: add java heapSize arguments.l-d-s
2018-11-29Correct argument for gridss option filel-d-s
2018-11-15Fix up gridss config file.l-d-s
2018-11-15Need to test config != nulll-d-s
2018-11-12Attempt to integrate config file into GRIDSS stagel-d-s
2018-10-29Split gridss into constituentsJustin Bedo
Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10.
2018-10-05implement typesJustin Bedo
2018-10-04Refactor referencesJustin Bedo
2018-10-04Refactor to use bionix tree directlyJustin Bedo
2018-09-26Missing GRIDSS filesJustin Bedo