| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-04-07 | modify outputs to ensure determinism | Justin Bedo | |
| 2019-03-28 | gridss: less chatty logs | Justin Bedo | |
| 2019-03-15 | add multicore passthru flag | Justin Bedo | |
| 2019-01-09 | large refactor | Justin Bedo | |
| - use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage | |||
| 2018-12-10 | gridss: add java heapSize arguments. | l-d-s | |
| 2018-11-29 | Correct argument for gridss option file | l-d-s | |
| 2018-11-15 | Fix up gridss config file. | l-d-s | |
| 2018-11-15 | Need to test config != null | l-d-s | |
| 2018-11-12 | Attempt to integrate config file into GRIDSS stage | l-d-s | |
| 2018-10-29 | Split gridss into constituents | Justin Bedo | |
| Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10. | |||
| 2018-10-05 | implement types | Justin Bedo | |
| 2018-10-04 | Refactor references | Justin Bedo | |
| 2018-10-04 | Refactor to use bionix tree directly | Justin Bedo | |
| 2018-09-26 | Missing GRIDSS files | Justin Bedo | |
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index : bionix.git | |
| Functional, highly-reproducible bioinformatics pipelines |
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