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Functional, highly-reproducible bioinformatics pipelines
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2019-04-18
sbatch: initial slurm implementation
Justin Bedo
2019-04-17
snap: init
Justin Bedo
2019-04-12
minimap2: init
Justin Bedo
2019-04-07
update stage names to include bionix- prefix
Justin Bedo
2019-03-15
add multicore passthru flag
Justin Bedo
2019-03-01
ascat: init
Justin Bedo
2019-02-06
qsub: rename flags to qsubFlags to avoid collision
Justin Bedo
2019-02-06
qsub: parameterise queue and allow arbitrary flags to be passed
Justin Bedo
2019-01-23
stage: change to stdenvNoCC
Justin Bedo
2019-01-10
facets: init
Justin Bedo
2019-01-10
cnvkit: init
Justin Bedo
2019-01-09
large refactor
Justin Bedo
2019-01-09
split/join/each: introduce functions for splitting/joining drvs
Justin Bedo
2019-01-08
snpeff: init
Justin Bedo
2018-12-19
bionix: export nixpkgs.lib as bionix.lib
Justin Bedo
2018-12-19
link: introduce high-level linking functions
Justin Bedo
2018-12-18
pipe: fix bug
Justin Bedo
2018-12-18
pipe: reverse function composition
Justin Bedo
2018-12-18
qsub: refactor overriding
Justin Bedo
2018-12-10
bowtie: init
Justin Bedo
2018-11-20
Add some typed fetchurl functions
Justin Bedo
2018-11-02
kallisto: init
Justin Bedo
2018-10-26
init: mutect
Justin Bedo
2018-10-23
Wrap inferCNV
Justin Bedo
2018-10-05
implement types
Justin Bedo
2018-10-04
Add defQsub function
Justin Bedo
2018-10-04
Add def function to simplify overrides
Justin Bedo
2018-10-04
Add qsub function to override all attributes
Justin Bedo
2018-10-04
Refactor to use bionix tree directly
Justin Bedo
2018-10-03
refactor reference location to lib
Justin Bedo
2018-09-28
Add crumble
Justin Bedo
2018-09-26
Add GRIDSS
Justin Bedo
2018-09-26
Add qsub to bionix top level
Justin Bedo
2018-09-26
Add flagstat and fastqc
Justin Bedo
2018-09-26
refactor, add mosdepth, and fixes for bwa
Justin Bedo
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